Downloaded the electrical schematics and verified the stock wiring of the dual batteries is standard A or B, not House and starting. One note of interest was the way the bilge pump(s) is/are wired, the stock harness ties them to the active battery via the switch, rather than dedicated to one battery or the other. Anyway, you mention the far battery has additional wiring attached to it. I suspect that this is not stock. Is there evidence of any owner installed after-market accessories? As stated before, I'd be inclined to attach the charger wiring marked 'starter' to the A battery.
_________________ 2007 Horizon 200
4.3L GXi/ SX 225 HP
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