Here's what I learned about how plywood rots, it is very deceptive, in that the wood is roughly 5 plys glued together. It can start to rot in the inner plys and the top most layers can feel solid but when I cut out my old deck, I was amazed at how far the rot went. The places you look are, the opening for the ski locker, the edges where the deck is cut out for the hatch over the gas tank, because of the tendency of moisture to get trapped between the hatch and the framing around it. On my boat that framing was raw pine, not glassed or anything. The mounts for the gas tank tabs had all rotted off, only one of the 4 was holding it in place.
If the screws hold tight, then you are in good shape. If you remove the OE seats, I'd recommend filling the holes with some thickened epoxy (you can thicken it with sawdust). Any new holes you drill, before you put in the screws for the new seats, inject some thinned epoxy (like Rot Docs CPES) in there and let it cure. Then use 3M 4200 or Boat Life Caulk to bed the screws, the proper way is to fill the hole, put the screw in about 3/4 of the way, then let it set up for a day, and then screw them in all the way. That keeps the sealer from getting squeezed out of the holes.
Even though you feel you don't have issues, I'd still look in the area under the ski locker and lift up that gas tank hatch and see how it looks in there, good idea to check the fuel lines after all that time anyway.....
_________________ 88 Four Winns 200 Horizon 4.3 OMC Cobra-4bbl 2002 Walker Bay 10/2012 Suzuki 2.5 2008 Walker Bay 8
1998 Jeep Grand Cherokee 4.0/Selectrac 2007 Jeep Grand Cherokee 5.7 Hemi/Quadradrive II
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